The Joes attack Cobra to stop the use of a dangerous device, expose its owners and clear the team's name.

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Cobra plans to increase its power by deploying the MASS device, but Scarlett plays a key role in its operation.

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A series of earthquakes alerts the Joes to a network of tunnels Cobra is constructing to link its strongholds around the country.

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Flint gets help from Heavy Duty to capture Roadblock. Meanwhile, Major Budd seeks revenge against the Joes.

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A Cobra commander is attacked by a ninja and forced to escape to his secure facility. Meanwhile, Snake Eyes and Scarlett sneak into the commander's facility.

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The Joes head to New York to find a missing kid. While investigating, they encounter a Sewer Viper being pursued by a Mindbender.

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Cobra's medical facility is raided by the Joes, who are searching for Patient X.

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The Joes uncover a deadly Anaconda Strain virus while searching for a missing scientist and learn of Cobra's plan to profit from the sale of its antidote.

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The Joes uncover a mind-control scheme at the Baroness's château.

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In Scotland, the Joes become trapped in Destro's castle while on a mission investigating a Cobra weapon.

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A sea captain helps the Joes transport a bio-viper canister taken from Cobra's lab, but things go wrong on the journey.

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The prototype Shadow-Vipers and Storm Shadow follow the Joes to Canada, where they are hiding out with Snow Job.

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Lady Jaye and Flint use Zartan to track the Joes. Meanwhile, the Baroness tries to sneak a camouflage suit to Cobra

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Tomax and Xamot entrance the Joes and hold them in a commune.

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The Joes try to destroy a bio-viper facility, but are hindered by Firefly, a saboteur for Cobra.

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The Joes penetrate a Cobra facility where an exo-armor weapon is being developed.

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Duke is arrested while buying parts for the Coyote, and the Joes have to break him out of jail before others can find him.

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The Joes go on a mission to stop Zartan and his motorcycle gang from terrorizing a small town.

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Scrap-Iron kidnaps Tunnel Rat and uses him to test a weaponized exo-suit. Roadblock attempts a rescue by allowing himself to be kidnapped as well.

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Baroness tries to hijack the Joes as they're being transported by Flint and Lady Jaye, so she can gain control of the secrets stored on Cobra's drive.

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Duke protects his family, who have been targeted by Cobra, while the team sneaks into Cobra's Christmas party.

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The Joe team regroup after an ambush from Storm Shadow and must come up with a plan to rescue Jinx, who has been kidnapped.

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The Joes train with Snake Eyes at his dojo and learn about his connection to Storm Shadow.

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The Joes stop the Baroness' mercenary from completing his planned assassination.

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The Joes track a Cobra Bio-Viper while fleeing the military to evade punishment for a crime they did not commit.

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Recruited soldiers escort Army intelligence to investigate Cobra's facilities and are surprised by what they find.

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